PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00972g01004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27428.2 Da    PI: 6.5392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00972g01004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.2e-131550742
                              HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              s r+  + kR + ++KKAeE S+LCd++vaviif +
  Peinf101Scf00972g01004.1 15 SVRNSILNKRAASLFKKAEEFSILCDVKVAVIIFNP 50
                              55666689*************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.619149IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-19293IPR002100Transcription factor, MADS-box
CDDcd002664.84E-17284No hitNo description
PfamPF003191.0E-131351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTRKRLKHTR NCDESVRNSI LNKRAASLFK KAEEFSILCD VKVAVIIFNP GEVEPIVWPS  60
SNQAEDIIKK YLRSSEAERL KKLVKHETYL LEKVNAQEKN IIKIEKMNEE KEMELLFNQL  120
VEGKNINELD ARQLKGLLKL SATKKAKLAE RKKQLNQQNQ PNVKPPNENE NVANQSDGFH  180
NVMPSASLME DLMNDSWFME TMAAYDDNLG FWSGSGTELA PIEGSDSNVG ENKDGHPKNL  240
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794692.11e-102PREDICTED: MADS-box protein AGL24-like
RefseqXP_016468130.11e-102PREDICTED: MADS-box protein AGL71-like
TrEMBLM1DUQ76e-79M1DUQ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000947142e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.32e-16M-type_MADS family protein